Review



whole human genome oligo 4 × 44 k microarrays  (Agilent technologies)


Bioz Verified Symbol Agilent technologies is a verified supplier
Bioz Manufacturer Symbol Agilent technologies manufactures this product  
  • Logo
  • About
  • News
  • Press Release
  • Team
  • Advisors
  • Partners
  • Contact
  • Bioz Stars
  • Bioz vStars
  • 90

    Structured Review

    Agilent technologies whole human genome oligo 4 × 44 k microarrays
    Whole Human Genome Oligo 4 × 44 K Microarrays, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/whole+human+genome+oligo+microarray+(4+%C3%97+44+k/pm38810421-181-13-14
    Average 90 stars, based on 1 article reviews
    whole human genome oligo 4 × 44 k microarrays - by Bioz Stars, 2026-09
    90/100 stars

    Images

    Related Articles

    Hybridization:

    Article Title: Molecular signature of response and potential pathways related to resistance to the HSP90 inhibitor, 17AAG, in breast cancer
    Article Snippet: After amplification and labeling, cRNA quantity and cyanine incorporation were determined using a nanodrop ND.1000 UV-VIS-Spectrophotometer version 3.2.1 (Agilent Technologies). .. For each hybridization,1 μg Cyanine 3 labeled cRNA (reference) and 1 μg of Cyanine 5 labeled cRNA (samples) were mixed, fragmented, and hybridized at 65°C for 17 hours to an Agilent 4 × 44 K Whole Human genome Oligo Microarray containing 45,015 features representing 41,000 unique probes. ..

    Labeling:

    Article Title: Molecular signature of response and potential pathways related to resistance to the HSP90 inhibitor, 17AAG, in breast cancer
    Article Snippet: After amplification and labeling, cRNA quantity and cyanine incorporation were determined using a nanodrop ND.1000 UV-VIS-Spectrophotometer version 3.2.1 (Agilent Technologies). .. For each hybridization,1 μg Cyanine 3 labeled cRNA (reference) and 1 μg of Cyanine 5 labeled cRNA (samples) were mixed, fragmented, and hybridized at 65°C for 17 hours to an Agilent 4 × 44 K Whole Human genome Oligo Microarray containing 45,015 features representing 41,000 unique probes. ..

    Article Title: Mycobacterium tuberculosis infection up-regulates MFN2 expression to promote NLRP3 inflammasome formation
    Article Snippet: .. Microarray assays and bioinformatics analysis RNA samples from each group were used to generate fluorescence labeled cRNA targets for the Agilent Whole Human Genome Oligo Microarray (4 × 44 K, including ~41,000 genes and transcripts). ..

    Microarray:

    Article Title: Molecular signature of response and potential pathways related to resistance to the HSP90 inhibitor, 17AAG, in breast cancer
    Article Snippet: After amplification and labeling, cRNA quantity and cyanine incorporation were determined using a nanodrop ND.1000 UV-VIS-Spectrophotometer version 3.2.1 (Agilent Technologies). .. For each hybridization,1 μg Cyanine 3 labeled cRNA (reference) and 1 μg of Cyanine 5 labeled cRNA (samples) were mixed, fragmented, and hybridized at 65°C for 17 hours to an Agilent 4 × 44 K Whole Human genome Oligo Microarray containing 45,015 features representing 41,000 unique probes. ..

    Article Title: A Diagnostic Gene-Expression Signature in Fibroblasts of Amyotrophic Lateral Sclerosis.
    Article Snippet: Briefly, 1 ug of total RNA from each sample was amplified and transcribed into fluorescent complementary DNA (cDNA) using the Low RNA Input Fluorescent Linear Amplification Kit (Agilent Technologies, Inc., CA, USA), after which labelled RNA was cleaned using RNeasy column purification (Qiagen, Venlo, the Netherlands). .. The Cyanine-3 (Cy3) labelled cRNA samples were hybridized onto the Whole Human Genome Oligo Microarray (4 × 44 K; Agilent Technologies, Inc., Santa Clara, CA, USA). .. Aliquots (750 ng) of Cy3 labeled cRNA targets were co-hybridized on 4 × 44 K Whole Cells 2023, 12, 1884 4 of 19 Human Genome Oligo Microarrays (Agilent Technologies, Italy).

    Article Title: IL-17a promotes hepatocellular carcinoma by increasing FAP expression in hepatic stellate cells via activation of the STAT3 signaling pathway
    Article Snippet: .. Human expression profiling was performed using an Agilent Whole Human Genome Oligo Microarray (4 × 44 K) (Agilent, USA) by Shanghai Biotechnology Corporation (Shanghai, China). ..

    Article Title: Putative tumour-suppressor gene DAB2 is frequently down regulated by promoter hypermethylation in nasopharyngeal carcinoma
    Article Snippet: .. Gene expression analysis of C666-1 transiently transfected with pcDNA3.1(+)/ DAB2 for 24 hours as compared with cells transfected with empty vectors as controls were subjected to microarray analysis using 4 × 44 K Whole Human Genome Oligo Microarray system (Agilent Technologies, Santa Clara, CA). ..

    Article Title: Mycobacterium tuberculosis infection up-regulates MFN2 expression to promote NLRP3 inflammasome formation
    Article Snippet: .. Microarray assays and bioinformatics analysis RNA samples from each group were used to generate fluorescence labeled cRNA targets for the Agilent Whole Human Genome Oligo Microarray (4 × 44 K, including ~41,000 genes and transcripts). ..

    Article Title: Increased Endoplasmic Reticulum Stress Response Is Involved in Clopidogrel-Induced Apoptosis of Gastric Epithelial Cells
    Article Snippet: Finally, total RNA was purified using an RNeasy mini kit (Qiagen). .. The Agilent Whole Human Genome Oligo Microarray (4×44 K, Agilent, San Diego, CA, USA), which represents more than 41, 000 human genes and transcripts, was used in this study to further systematically screen the differentially expressed genes between vehicle- and clopidogrel-treated cells. .. Single- and double-stranded cDNA was synthesized from total RNA samples (2 μg) according to Agilent Gene-Chip Expression Analysis Technical Manual.

    Expressing:

    Article Title: IL-17a promotes hepatocellular carcinoma by increasing FAP expression in hepatic stellate cells via activation of the STAT3 signaling pathway
    Article Snippet: .. Human expression profiling was performed using an Agilent Whole Human Genome Oligo Microarray (4 × 44 K) (Agilent, USA) by Shanghai Biotechnology Corporation (Shanghai, China). ..

    Gene Expression:

    Article Title: Putative tumour-suppressor gene DAB2 is frequently down regulated by promoter hypermethylation in nasopharyngeal carcinoma
    Article Snippet: .. Gene expression analysis of C666-1 transiently transfected with pcDNA3.1(+)/ DAB2 for 24 hours as compared with cells transfected with empty vectors as controls were subjected to microarray analysis using 4 × 44 K Whole Human Genome Oligo Microarray system (Agilent Technologies, Santa Clara, CA). ..

    Transfection:

    Article Title: Putative tumour-suppressor gene DAB2 is frequently down regulated by promoter hypermethylation in nasopharyngeal carcinoma
    Article Snippet: .. Gene expression analysis of C666-1 transiently transfected with pcDNA3.1(+)/ DAB2 for 24 hours as compared with cells transfected with empty vectors as controls were subjected to microarray analysis using 4 × 44 K Whole Human Genome Oligo Microarray system (Agilent Technologies, Santa Clara, CA). ..

    Fluorescence:

    Article Title: Mycobacterium tuberculosis infection up-regulates MFN2 expression to promote NLRP3 inflammasome formation
    Article Snippet: .. Microarray assays and bioinformatics analysis RNA samples from each group were used to generate fluorescence labeled cRNA targets for the Agilent Whole Human Genome Oligo Microarray (4 × 44 K, including ~41,000 genes and transcripts). ..

    other:

    Article Title: Genome-Wide Profiling of Histone H3 Lysine 4 and Lysine 27 Trimethylation Reveals an Epigenetic Signature in Prostate Carcinogenesis
    Article Snippet: The Agilent Human Whole Genome (4×44 k) Oligo Microarray with Sure Print Technology (Agilent Technologies, Palo Alto, CA, USA) was used to analyze samples in the present study.

    Article Title: Epithelial to Mesenchymal Transition of a Primary Prostate Cell Line with Switches of Cell Adhesion Modules but without Malignant Transformation
    Article Snippet: The Agilent Human Whole Genome (4×44 k) Oligo Microarray with Sure Print Technology (Agilent Technologies, Inc., Palo Alto, CA) was used to analyze samples in the present study.



    Similar Products

    90
    Agilent technologies whole human genome oligo 4 × 44 k microarrays
    Whole Human Genome Oligo 4 × 44 K Microarrays, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/whole+human+genome+oligo+microarray+(4+%C3%97+44+k/pm38810421-181-13-14
    Average 90 stars, based on 1 article reviews
    whole human genome oligo 4 × 44 k microarrays - by Bioz Stars, 2026-09
    90/100 stars
      Buy from Supplier

    90
    Agilent technologies whole human genome oligo microarray (4 × 44 k
    Whole Human Genome Oligo Microarray (4 × 44 K, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/whole+human+genome+oligo+microarray+(4+%C3%97+44+k/pmc11091202-267-8-17
    Average 90 stars, based on 1 article reviews
    whole human genome oligo microarray (4 × 44 k - by Bioz Stars, 2026-09
    90/100 stars
      Buy from Supplier

    90
    Agilent technologies 4 × 44 k whole human genome oligo expression microarrays
    4 × 44 K Whole Human Genome Oligo Expression Microarrays, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/whole+human+genome+oligo+microarray+(4+%C3%97+44+k/pmc10454105-72-66-72
    Average 90 stars, based on 1 article reviews
    4 × 44 k whole human genome oligo expression microarrays - by Bioz Stars, 2026-09
    90/100 stars
      Buy from Supplier

    90
    Agilent technologies whole human genome oligo microarrays, 4 × 44 k
    Whole Human Genome Oligo Microarrays, 4 × 44 K, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/whole+human+genome+oligo+microarray+(4+%C3%97+44+k/pm36410673-71-6-5
    Average 90 stars, based on 1 article reviews
    whole human genome oligo microarrays, 4 × 44 k - by Bioz Stars, 2026-09
    90/100 stars
      Buy from Supplier

    90
    Agilent technologies whole human genome oligo microarray 4×44 k probe set
    Whole Human Genome Oligo Microarray 4×44 K Probe Set, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/whole+human+genome+oligo+microarray+(4+%C3%97+44+k/us11535825-334-17-16
    Average 90 stars, based on 1 article reviews
    whole human genome oligo microarray 4×44 k probe set - by Bioz Stars, 2026-09
    90/100 stars
      Buy from Supplier

    90
    Agilent technologies human whole genome (4×44 k) oligo microarray sure print
    Human Whole Genome (4×44 K) Oligo Microarray Sure Print, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/whole+human+genome+oligo+microarray+(4+%C3%97+44+k/pmc02557125-257-2-1
    Average 90 stars, based on 1 article reviews
    human whole genome (4×44 k) oligo microarray sure print - by Bioz Stars, 2026-09
    90/100 stars
      Buy from Supplier

    90
    Agilent technologies human whole genome oligo 4 × 44 k microarray
    Human Whole Genome Oligo 4 × 44 K Microarray, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/whole+human+genome+oligo+microarray+(4+%C3%97+44+k/pmc03979035-53-11-10
    Average 90 stars, based on 1 article reviews
    human whole genome oligo 4 × 44 k microarray - by Bioz Stars, 2026-09
    90/100 stars
      Buy from Supplier

    90
    Agilent technologies whole human genome oligo microarray 4×44 k
    Flowchart of the experimental procedure. Notes: ( A ) Twenty-two samples were analyzed with <t>microarray</t> experiments, and the data were compared with hiPSC 201B7 data from GEO (GSM241846) after normalization. ( b and C ) To detect differentially expressed genes/probes, two parameters were used for gene selection; one is ( b ) |G-A|-2V > 0 and another is ( C ) max–min > average + 2SD. ( b ) G, A, and V are denoted as follows: the average of gene expression level among the CSCs, the gene expression level of hiPSC 201B7, and the SD of the gene expression level among the CSCs, respectively. These values were calculated with I , which was described in the “Materials and methods” section. ( C ) Average + 2SD was calculated with the max–min value. These values were calculated with Bioconductor normalized intensity for each gene. Normalized intensity i’ was shown in base-2 logarithm on Y-axis. For , a gene set was made by only one parameter ( b ). To list up genes that have much difference, parameter ( C ) in addition to ( b ) was used for each gene set of – . Using each gene set, sSOM analysis was performed with I .
    Whole Human Genome Oligo Microarray 4×44 K, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/whole+human+genome+oligo+microarray+(4+%C3%97+44+k/pmc04988459-144-12-19
    Average 90 stars, based on 1 article reviews
    whole human genome oligo microarray 4×44 k - by Bioz Stars, 2026-09
    90/100 stars
      Buy from Supplier

    90
    Agilent technologies whole human genome 4×44 k oligo-dna microarray
    Scatter plots compared the embryonic stem cell marker genes expression between chemically defined culture conditions (MSCGM-CD) and normal culture conditions (MSCGM) determined by <t>DNA</t> <t>microarray.</t> The green lines indicate the diagonal and 2-fold changes between the two samples. Black and red circles indicate the expression levels of some embryonic stem cell marker genes .
    Whole Human Genome 4×44 K Oligo Dna Microarray, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/whole+human+genome+oligo+microarray+(4+%C3%97+44+k/pmc04270765-47-26-28
    Average 90 stars, based on 1 article reviews
    whole human genome 4×44 k oligo-dna microarray - by Bioz Stars, 2026-09
    90/100 stars
      Buy from Supplier

    90
    Agilent technologies 4 × 44 k whole human genome oligo microarray system
    Scatter plots compared the embryonic stem cell marker genes expression between chemically defined culture conditions (MSCGM-CD) and normal culture conditions (MSCGM) determined by <t>DNA</t> <t>microarray.</t> The green lines indicate the diagonal and 2-fold changes between the two samples. Black and red circles indicate the expression levels of some embryonic stem cell marker genes .
    4 × 44 K Whole Human Genome Oligo Microarray System, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/whole+human+genome+oligo+microarray+(4+%C3%97+44+k/pmc02891638-86-33-39
    Average 90 stars, based on 1 article reviews
    4 × 44 k whole human genome oligo microarray system - by Bioz Stars, 2026-09
    90/100 stars
      Buy from Supplier

    Image Search Results


    Flowchart of the experimental procedure. Notes: ( A ) Twenty-two samples were analyzed with microarray experiments, and the data were compared with hiPSC 201B7 data from GEO (GSM241846) after normalization. ( b and C ) To detect differentially expressed genes/probes, two parameters were used for gene selection; one is ( b ) |G-A|-2V > 0 and another is ( C ) max–min > average + 2SD. ( b ) G, A, and V are denoted as follows: the average of gene expression level among the CSCs, the gene expression level of hiPSC 201B7, and the SD of the gene expression level among the CSCs, respectively. These values were calculated with I , which was described in the “Materials and methods” section. ( C ) Average + 2SD was calculated with the max–min value. These values were calculated with Bioconductor normalized intensity for each gene. Normalized intensity i’ was shown in base-2 logarithm on Y-axis. For , a gene set was made by only one parameter ( b ). To list up genes that have much difference, parameter ( C ) in addition to ( b ) was used for each gene set of – . Using each gene set, sSOM analysis was performed with I .

    Journal: Cancer Informatics

    Article Title: Characterization of Gene Expression Patterns among Artificially Developed Cancer Stem Cells Using Spherical Self-Organizing Map

    doi: 10.4137/CIN.S39839

    Figure Lengend Snippet: Flowchart of the experimental procedure. Notes: ( A ) Twenty-two samples were analyzed with microarray experiments, and the data were compared with hiPSC 201B7 data from GEO (GSM241846) after normalization. ( b and C ) To detect differentially expressed genes/probes, two parameters were used for gene selection; one is ( b ) |G-A|-2V > 0 and another is ( C ) max–min > average + 2SD. ( b ) G, A, and V are denoted as follows: the average of gene expression level among the CSCs, the gene expression level of hiPSC 201B7, and the SD of the gene expression level among the CSCs, respectively. These values were calculated with I , which was described in the “Materials and methods” section. ( C ) Average + 2SD was calculated with the max–min value. These values were calculated with Bioconductor normalized intensity for each gene. Normalized intensity i’ was shown in base-2 logarithm on Y-axis. For , a gene set was made by only one parameter ( b ). To list up genes that have much difference, parameter ( C ) in addition to ( b ) was used for each gene set of – . Using each gene set, sSOM analysis was performed with I .

    Article Snippet: For iPS-CC1 and iPS-GC1, the microarray study was carried out using a Whole Human Genome Oligo Microarray 4×44 K (Agilent Technologies).

    Techniques: Microarray, Selection, Expressing

    Mapping and clustering of normal hiPS and all the CSCs with sSOM. Microarray data of hiPSC 201B7 were obtained from NCBI GEO (GSM241846), and those of the CSCs were obtained as our original data. Notes: ( A ) Gene expression patterns were analyzed by sSOM with the microarray data of GSM241846 and the CSCs. The data were used 2678 probes, which were extracted by |A-G|-2V > 0. ( b ) Each of the CSCs and hiPSC 201B7 was mapped on a sphere by sSOM analysis. The CSCs were clustered into three groups with sSOM. Each of analyzed CSCs was depicted on a sphere. The CSCs named in red color were mapped on the front side of the sphere. The CSCs named in light blue color were mapped on the back side of the sphere.

    Journal: Cancer Informatics

    Article Title: Characterization of Gene Expression Patterns among Artificially Developed Cancer Stem Cells Using Spherical Self-Organizing Map

    doi: 10.4137/CIN.S39839

    Figure Lengend Snippet: Mapping and clustering of normal hiPS and all the CSCs with sSOM. Microarray data of hiPSC 201B7 were obtained from NCBI GEO (GSM241846), and those of the CSCs were obtained as our original data. Notes: ( A ) Gene expression patterns were analyzed by sSOM with the microarray data of GSM241846 and the CSCs. The data were used 2678 probes, which were extracted by |A-G|-2V > 0. ( b ) Each of the CSCs and hiPSC 201B7 was mapped on a sphere by sSOM analysis. The CSCs were clustered into three groups with sSOM. Each of analyzed CSCs was depicted on a sphere. The CSCs named in red color were mapped on the front side of the sphere. The CSCs named in light blue color were mapped on the back side of the sphere.

    Article Snippet: For iPS-CC1 and iPS-GC1, the microarray study was carried out using a Whole Human Genome Oligo Microarray 4×44 K (Agilent Technologies).

    Techniques: Microarray, Expressing

    Mapping and comparison of normal hiPSC and iPS-CC1 cells with sSOM. Notes: ( A ) Gene expression patterns analyzed by sSOM with the microarray data of 201B7 (GSM241846) and iPS-CC1. The data were used 598 genes, which were extracted by the two parameters (see ). Each of iPS-CC1 was mapped as a sphere by sSOM analysis. The normalized intensities of 323 upregulating genes ( b ) or 275 downregulating genes ( C ) in iPS-CC1, which were compared to GSM241846, were analyzed by sSOM. Ten genes close to the IP were aligned by the order of NSD as listed in and . Graphs were depicted as mean + SD. Normalized intensity i’ was shown in base-2 logarithm on Y-axis. Y-linked genes were eliminated from the list because sex differences were confounding factor.

    Journal: Cancer Informatics

    Article Title: Characterization of Gene Expression Patterns among Artificially Developed Cancer Stem Cells Using Spherical Self-Organizing Map

    doi: 10.4137/CIN.S39839

    Figure Lengend Snippet: Mapping and comparison of normal hiPSC and iPS-CC1 cells with sSOM. Notes: ( A ) Gene expression patterns analyzed by sSOM with the microarray data of 201B7 (GSM241846) and iPS-CC1. The data were used 598 genes, which were extracted by the two parameters (see ). Each of iPS-CC1 was mapped as a sphere by sSOM analysis. The normalized intensities of 323 upregulating genes ( b ) or 275 downregulating genes ( C ) in iPS-CC1, which were compared to GSM241846, were analyzed by sSOM. Ten genes close to the IP were aligned by the order of NSD as listed in and . Graphs were depicted as mean + SD. Normalized intensity i’ was shown in base-2 logarithm on Y-axis. Y-linked genes were eliminated from the list because sex differences were confounding factor.

    Article Snippet: For iPS-CC1 and iPS-GC1, the microarray study was carried out using a Whole Human Genome Oligo Microarray 4×44 K (Agilent Technologies).

    Techniques: Expressing, Microarray

    Mapping and comparison of normal hiPSC and iPS-GC1 with sSOM. Notes: ( A ) Gene expression patterns analyzed by sSOM with the microarray data of 201B7 (GSM251846) and iPS-GC1. The data were used 439 genes, which were extracted by the two parameters (see ). Each of iPS-GC1 was mapped as a sphere by sSOM analysis. The normalized intensities of 328 upregulating genes ( b ) or 111 downregulating genes ( C ) of iPS-GC1, which were compared to GSM241846, were analyzed by sSOM, and 10 genes close to the IP were aligned by the order of NSD as listed in and . Graphs are depicted as mean + SD. Normalized intensity i’ was shown in base-2 logarithm on Y-axis. Y-linked genes were eliminated from the list because sex differences were confounding factor.

    Journal: Cancer Informatics

    Article Title: Characterization of Gene Expression Patterns among Artificially Developed Cancer Stem Cells Using Spherical Self-Organizing Map

    doi: 10.4137/CIN.S39839

    Figure Lengend Snippet: Mapping and comparison of normal hiPSC and iPS-GC1 with sSOM. Notes: ( A ) Gene expression patterns analyzed by sSOM with the microarray data of 201B7 (GSM251846) and iPS-GC1. The data were used 439 genes, which were extracted by the two parameters (see ). Each of iPS-GC1 was mapped as a sphere by sSOM analysis. The normalized intensities of 328 upregulating genes ( b ) or 111 downregulating genes ( C ) of iPS-GC1, which were compared to GSM241846, were analyzed by sSOM, and 10 genes close to the IP were aligned by the order of NSD as listed in and . Graphs are depicted as mean + SD. Normalized intensity i’ was shown in base-2 logarithm on Y-axis. Y-linked genes were eliminated from the list because sex differences were confounding factor.

    Article Snippet: For iPS-CC1 and iPS-GC1, the microarray study was carried out using a Whole Human Genome Oligo Microarray 4×44 K (Agilent Technologies).

    Techniques: Expressing, Microarray

    Mapping and comparison of normal hiPSC and OCC-hiPS with sSOM. Notes: ( A ) Gene expression patterns analyzed by sSOM with the microarray data of 201B7 (GSM241846) and OCC-hiPS. The data were used 402 genes, which was extracted by the two parameters (see ). Each of OCC-hiPS was mapped as a sphere by sSOM analysis. The normalized intensities of 255 upregulating genes ( b ) or 147 downregulating genes ( C ) of OCC-hiPS, which were compared to GSM241826, were analyzed by sSOM. Ten genes close to the IP were aligned by the order of NSD as listed in and . Graphs were depicted as mean + SD. Normalized intensity i’ was shown in base-2 logarithm on Y-axis.

    Journal: Cancer Informatics

    Article Title: Characterization of Gene Expression Patterns among Artificially Developed Cancer Stem Cells Using Spherical Self-Organizing Map

    doi: 10.4137/CIN.S39839

    Figure Lengend Snippet: Mapping and comparison of normal hiPSC and OCC-hiPS with sSOM. Notes: ( A ) Gene expression patterns analyzed by sSOM with the microarray data of 201B7 (GSM241846) and OCC-hiPS. The data were used 402 genes, which was extracted by the two parameters (see ). Each of OCC-hiPS was mapped as a sphere by sSOM analysis. The normalized intensities of 255 upregulating genes ( b ) or 147 downregulating genes ( C ) of OCC-hiPS, which were compared to GSM241826, were analyzed by sSOM. Ten genes close to the IP were aligned by the order of NSD as listed in and . Graphs were depicted as mean + SD. Normalized intensity i’ was shown in base-2 logarithm on Y-axis.

    Article Snippet: For iPS-CC1 and iPS-GC1, the microarray study was carried out using a Whole Human Genome Oligo Microarray 4×44 K (Agilent Technologies).

    Techniques: Expressing, Microarray

    Scatter plots compared the embryonic stem cell marker genes expression between chemically defined culture conditions (MSCGM-CD) and normal culture conditions (MSCGM) determined by DNA microarray. The green lines indicate the diagonal and 2-fold changes between the two samples. Black and red circles indicate the expression levels of some embryonic stem cell marker genes .

    Journal: PLoS ONE

    Article Title: Derivation of iPSCs after Culture of Human Dental Pulp Cells under Defined Conditions

    doi: 10.1371/journal.pone.0115392

    Figure Lengend Snippet: Scatter plots compared the embryonic stem cell marker genes expression between chemically defined culture conditions (MSCGM-CD) and normal culture conditions (MSCGM) determined by DNA microarray. The green lines indicate the diagonal and 2-fold changes between the two samples. Black and red circles indicate the expression levels of some embryonic stem cell marker genes .

    Article Snippet: Following labeling and clean-up, the cDNAs were quantified using an ND-1000 Spectrophotometer (Nano Drop Technologies, Wilmington, DE) and hybridized with a whole human genome 4×44 K oligo-DNA microarray (Agilent Technologies).

    Techniques: Marker, Expressing, Microarray